Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = []
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 2 => [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 2 => [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 3 => [
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 2 => [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 3 => [
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 4 => [
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 2 => [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 3 => [
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 4 => [
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 5 => [
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 2 => [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 3 => [
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 4 => [
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 5 => [
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 6 => [
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 2 => [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 3 => [
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 4 => [
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 5 => [
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 6 => [
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 7 => [
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 2 => [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 3 => [
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 4 => [
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 5 => [
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 6 => [
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 7 => [
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 8 => [
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 2 => [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 3 => [
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 4 => [
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 5 => [
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 6 => [
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 7 => [
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 8 => [
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 9 => [
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (2): count() [<a href='https://secure.php.net/function.count'>function.count</a>]: Parameter must be an array or an object that implements Countable [APP/Controller/ProtocolsController.php, line 703]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$id = '141401'
$variable_mappings = [
(int) 0 => [
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 1 => [
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 2 => [
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 3 => [
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 4 => [
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 5 => [
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 6 => [
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 7 => [
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 8 => [
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 9 => [
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
],
(int) 10 => [
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'mappings' => 'https://www.phenxtoolkit.org/protocols/view/141401'
]
]
$variables = [
(int) 0 => object(App\Model\Entity\Variable) {
'id' => (int) 6769,
'name' => 'PX141401_Assay_Repeatability',
'code' => 'PX141401070000',
'description' => 'Repeatability of the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 1 => object(App\Model\Entity\Variable) {
'id' => (int) 6765,
'name' => 'PX141401_Blood_Draw_Comments',
'code' => 'PX141401040300',
'description' => 'Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 2 => object(App\Model\Entity\Variable) {
'id' => (int) 6763,
'name' => 'PX141401_Blood_Draw_Done',
'code' => 'PX141401040100',
'description' => 'Was blood drawn?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 3 => object(App\Model\Entity\Variable) {
'id' => (int) 6764,
'name' => 'PX141401_Blood_Draw_Sample',
'code' => 'PX141401040200',
'description' => 'Was full sample obtained?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 4 => object(App\Model\Entity\Variable) {
'id' => (int) 6761,
'name' => 'PX141401_Chemotherapy',
'code' => 'PX141401020000',
'description' => 'Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 5 => object(App\Model\Entity\Variable) {
'id' => (int) 6770,
'name' => 'PX141401_Coefficient_Of_Variation',
'code' => 'PX141401080000',
'description' => 'Coefficient of variation for the assay',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 6 => object(App\Model\Entity\Variable) {
'id' => (int) 6767,
'name' => 'PX141401_Equipment_Make',
'code' => 'PX141401060000',
'description' => 'Make of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 7 => object(App\Model\Entity\Variable) {
'id' => (int) 6768,
'name' => 'PX141401_Equipment_Manufacturer',
'code' => 'PX141401060100',
'description' => 'Manufacturer of the equipment used to determine the concentration of serum creatinine.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 8 => object(App\Model\Entity\Variable) {
'id' => (int) 6762,
'name' => 'PX141401_Exclusion_Criteria',
'code' => 'PX141401030000',
'description' => 'Exclusion Criteria',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 9 => object(App\Model\Entity\Variable) {
'id' => (int) 6760,
'name' => 'PX141401_Hemophilia',
'code' => 'PX141401010000',
'description' => 'Do you have hemophilia?',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 10 => object(App\Model\Entity\Variable) {
'id' => (int) 6766,
'name' => 'PX141401_Sample_Comments',
'code' => 'PX141401050000',
'description' => 'Record any comments about the sample during processing.',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
},
(int) 11 => object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
[maximum depth reached]
],
'[dirty]' => [[maximum depth reached]],
'[original]' => [[maximum depth reached]],
'[virtual]' => [[maximum depth reached]],
'[errors]' => [[maximum depth reached]],
'[invalid]' => [[maximum depth reached]],
'[repository]' => 'Variables'
}
]
$variable = object(App\Model\Entity\Variable) {
'id' => (int) 6771,
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'[new]' => false,
'[accessible]' => [
'name' => true,
'code' => true,
'description' => true,
'protocol_id' => true,
'type' => true,
'units' => true,
'min' => true,
'max' => true,
'comment1' => true,
'comment2' => true,
'variable_values' => true,
'version_num' => true,
'created_dt' => true,
'protocol' => true,
'variable_gap_mappings' => true,
'variable_histories' => true,
'variable_history_mappings' => true,
'variable_keywords' => true
],
'[dirty]' => [],
'[original]' => [],
'[virtual]' => [],
'[errors]' => [],
'[invalid]' => [],
'[repository]' => 'Variables'
}
$variable_mappings_obj = [
'name' => 'PX141401_Serum_Creatinine_Concentration',
'code' => 'PX141401090000',
'description' => 'Serum Creatinine Concentration',
'version_num' => (int) 0,
'mappings' => ''
]
$mappings = object(Cake\ORM\Query) {
'(help)' => 'This is a Query object, to get the results execute or iterate it.',
'sql' => 'SELECT VariableGapMappings.gap_phv AS `VariableGapMappings__gap_phv`, VariableGapMappings.gap_study_name AS `VariableGapMappings__gap_study_name`, VariableGapMappings.gap_variable_desc AS `VariableGapMappings__gap_variable_desc` FROM variable_gap_mappings VariableGapMappings WHERE variable_id = :c0 ORDER BY gap_study_name ASC',
'params' => [
':c0' => [
[maximum depth reached]
]
],
'defaultTypes' => [
'VariableGapMappings__id' => 'integer',
'VariableGapMappings.id' => 'integer',
'id' => 'integer',
'VariableGapMappings__variable_id' => 'integer',
'VariableGapMappings.variable_id' => 'integer',
'variable_id' => 'integer',
'VariableGapMappings__gap_study_name' => 'string',
'VariableGapMappings.gap_study_name' => 'string',
'gap_study_name' => 'string',
'VariableGapMappings__gap_study_accession' => 'string',
'VariableGapMappings.gap_study_accession' => 'string',
'gap_study_accession' => 'string',
'VariableGapMappings__gap_phv' => 'string',
'VariableGapMappings.gap_phv' => 'string',
'gap_phv' => 'string',
'VariableGapMappings__gap_variable_name' => 'string',
'VariableGapMappings.gap_variable_name' => 'string',
'gap_variable_name' => 'string',
'VariableGapMappings__gap_variable_desc' => 'string',
'VariableGapMappings.gap_variable_desc' => 'string',
'gap_variable_desc' => 'string',
'VariableGapMappings__created_dt' => 'datetime',
'VariableGapMappings.created_dt' => 'datetime',
'created_dt' => 'datetime',
'VariableGapMappings__map_level' => 'string',
'VariableGapMappings.map_level' => 'string',
'map_level' => 'string',
'VariableGapMappings__variable_name' => 'string',
'VariableGapMappings.variable_name' => 'string',
'variable_name' => 'string',
'VariableGapMappings__variable_code' => 'string',
'VariableGapMappings.variable_code' => 'string',
'variable_code' => 'string',
'VariableGapMappings__tcors_variable_desc' => 'string',
'VariableGapMappings.tcors_variable_desc' => 'string',
'tcors_variable_desc' => 'string',
'VariableGapMappings__tcors_recode_id' => 'string',
'VariableGapMappings.tcors_recode_id' => 'string',
'tcors_recode_id' => 'string',
'VariableGapMappings__tcors_study_name' => 'string',
'VariableGapMappings.tcors_study_name' => 'string',
'tcors_study_name' => 'string',
'VariableGapMappings__tcors_variable_name' => 'string',
'VariableGapMappings.tcors_variable_name' => 'string',
'tcors_variable_name' => 'string'
],
'decorators' => (int) 0,
'executed' => false,
'hydrate' => true,
'buffered' => true,
'formatters' => (int) 0,
'mapReducers' => (int) 0,
'contain' => [],
'matching' => [],
'extraOptions' => [],
'repository' => object(App\Model\Table\VariableGapMappingsTable) {}
}ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
count - [internal], line ??
App\Controller\ProtocolsController::export() - APP/Controller/ProtocolsController.php, line 703
Cake\Controller\Controller::invokeAction() - CORE/src/Controller/Controller.php, line 440
Cake\Http\ActionDispatcher::_invoke() - CORE/src/Http/ActionDispatcher.php, line 119
Cake\Http\ActionDispatcher::dispatch() - CORE/src/Http/ActionDispatcher.php, line 93
Cake\Http\BaseApplication::__invoke() - CORE/src/Http/BaseApplication.php, line 109
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\RoutingMiddleware::__invoke() - CORE/src/Routing/Middleware/RoutingMiddleware.php, line 104
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Routing\Middleware\AssetMiddleware::__invoke() - CORE/src/Routing/Middleware/AssetMiddleware.php, line 88
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Error\Middleware\ErrorHandlerMiddleware::__invoke() - CORE/src/Error/Middleware/ErrorHandlerMiddleware.php, line 98
Cake\Http\Runner::__invoke() - CORE/src/Http/Runner.php, line 65
Cake\Http\Runner::run() - CORE/src/Http/Runner.php, line 51
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 81
Warning (512): Unable to emit headers. Headers sent in file=/var/www/PhenxToolkit/cakephp/vendor/cakephp/cakephp/src/Error/Debugger.php line=850 [CORE/src/Http/ResponseEmitter.php, line 48]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$response = object(Cake\Http\Response) {
'status' => (int) 200,
'contentType' => 'text/csv',
'headers' => [
'Content-Type' => [
[maximum depth reached]
],
'Content-Security-Policy' => [
[maximum depth reached]
],
'Content-Disposition' => [
[maximum depth reached]
]
],
'file' => null,
'fileRange' => [],
'cookies' => object(Cake\Http\Cookie\CookieCollection) {},
'cacheDirectives' => [],
'body' => '"Variable Name","Variable ID","Variable Description",Version,"dbGaP Mapping"
PX141401_Assay_Repeatability,PX141401070000,"Repeatability of the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Comments,PX141401040300,"Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Done,PX141401040100,"Was blood drawn?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Sample,PX141401040200,"Was full sample obtained?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Chemotherapy,PX141401020000,"Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Coefficient_Of_Variation,PX141401080000,"Coefficient of variation for the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Make,PX141401060000,"Make of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Manufacturer,PX141401060100,"Manufacturer of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Exclusion_Criteria,PX141401030000,"Exclusion Criteria",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Hemophilia,PX141401010000,"Do you have hemophilia?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Sample_Comments,PX141401050000,"Record any comments about the sample during processing.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Serum_Creatinine_Concentration,PX141401090000,"Serum Creatinine Concentration",0,https://www.phenxtoolkit.org/protocols/view/141401
'
}
$maxBufferLength = (int) 8192
$file = '/var/www/PhenxToolkit/cakephp/vendor/cakephp/cakephp/src/Error/Debugger.php'
$line = (int) 850
$message = 'Unable to emit headers. Headers sent in file=/var/www/PhenxToolkit/cakephp/vendor/cakephp/cakephp/src/Error/Debugger.php line=850'ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
Cake\Http\ResponseEmitter::emit() - CORE/src/Http/ResponseEmitter.php, line 48
Cake\Http\Server::emit() - CORE/src/Http/Server.php, line 106
[main] - ROOT/webroot/index.php, line 40
Warning (2): Cannot modify header information - headers already sent by (output started at /var/www/PhenxToolkit/cakephp/vendor/cakephp/cakephp/src/Error/Debugger.php:850) [CORE/src/Http/ResponseEmitter.php, line 148]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$response = object(Cake\Http\Response) {
'status' => (int) 200,
'contentType' => 'text/csv',
'headers' => [
'Content-Type' => [
[maximum depth reached]
],
'Content-Security-Policy' => [
[maximum depth reached]
],
'Content-Disposition' => [
[maximum depth reached]
]
],
'file' => null,
'fileRange' => [],
'cookies' => object(Cake\Http\Cookie\CookieCollection) {},
'cacheDirectives' => [],
'body' => '"Variable Name","Variable ID","Variable Description",Version,"dbGaP Mapping"
PX141401_Assay_Repeatability,PX141401070000,"Repeatability of the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Comments,PX141401040300,"Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Done,PX141401040100,"Was blood drawn?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Sample,PX141401040200,"Was full sample obtained?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Chemotherapy,PX141401020000,"Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Coefficient_Of_Variation,PX141401080000,"Coefficient of variation for the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Make,PX141401060000,"Make of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Manufacturer,PX141401060100,"Manufacturer of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Exclusion_Criteria,PX141401030000,"Exclusion Criteria",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Hemophilia,PX141401010000,"Do you have hemophilia?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Sample_Comments,PX141401050000,"Record any comments about the sample during processing.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Serum_Creatinine_Concentration,PX141401090000,"Serum Creatinine Concentration",0,https://www.phenxtoolkit.org/protocols/view/141401
'
}
$reasonPhrase = 'OK'ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
header - [internal], line ??
Cake\Http\ResponseEmitter::emitStatusLine() - CORE/src/Http/ResponseEmitter.php, line 148
Cake\Http\ResponseEmitter::emit() - CORE/src/Http/ResponseEmitter.php, line 54
Cake\Http\Server::emit() - CORE/src/Http/Server.php, line 106
[main] - ROOT/webroot/index.php, line 40
Warning (2): Cannot modify header information - headers already sent by (output started at /var/www/PhenxToolkit/cakephp/vendor/cakephp/cakephp/src/Error/Debugger.php:850) [CORE/src/Http/ResponseEmitter.php, line 177]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$response = object(Cake\Http\Response) {
'status' => (int) 200,
'contentType' => 'text/csv',
'headers' => [
'Content-Type' => [
[maximum depth reached]
],
'Content-Security-Policy' => [
[maximum depth reached]
],
'Content-Disposition' => [
[maximum depth reached]
]
],
'file' => null,
'fileRange' => [],
'cookies' => object(Cake\Http\Cookie\CookieCollection) {},
'cacheDirectives' => [],
'body' => '"Variable Name","Variable ID","Variable Description",Version,"dbGaP Mapping"
PX141401_Assay_Repeatability,PX141401070000,"Repeatability of the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Comments,PX141401040300,"Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Done,PX141401040100,"Was blood drawn?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Sample,PX141401040200,"Was full sample obtained?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Chemotherapy,PX141401020000,"Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Coefficient_Of_Variation,PX141401080000,"Coefficient of variation for the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Make,PX141401060000,"Make of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Manufacturer,PX141401060100,"Manufacturer of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Exclusion_Criteria,PX141401030000,"Exclusion Criteria",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Hemophilia,PX141401010000,"Do you have hemophilia?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Sample_Comments,PX141401050000,"Record any comments about the sample during processing.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Serum_Creatinine_Concentration,PX141401090000,"Serum Creatinine Concentration",0,https://www.phenxtoolkit.org/protocols/view/141401
'
}
$cookies = []
$values = [
(int) 0 => 'text/csv; charset=UTF-8'
]
$name = 'Content-Type'
$first = true
$value = 'text/csv; charset=UTF-8'ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
header - [internal], line ??
Cake\Http\ResponseEmitter::emitHeaders() - CORE/src/Http/ResponseEmitter.php, line 177
Cake\Http\ResponseEmitter::emit() - CORE/src/Http/ResponseEmitter.php, line 55
Cake\Http\Server::emit() - CORE/src/Http/Server.php, line 106
[main] - ROOT/webroot/index.php, line 40
Warning (2): Cannot modify header information - headers already sent by (output started at /var/www/PhenxToolkit/cakephp/vendor/cakephp/cakephp/src/Error/Debugger.php:850) [CORE/src/Http/ResponseEmitter.php, line 177]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$response = object(Cake\Http\Response) {
'status' => (int) 200,
'contentType' => 'text/csv',
'headers' => [
'Content-Type' => [
[maximum depth reached]
],
'Content-Security-Policy' => [
[maximum depth reached]
],
'Content-Disposition' => [
[maximum depth reached]
]
],
'file' => null,
'fileRange' => [],
'cookies' => object(Cake\Http\Cookie\CookieCollection) {},
'cacheDirectives' => [],
'body' => '"Variable Name","Variable ID","Variable Description",Version,"dbGaP Mapping"
PX141401_Assay_Repeatability,PX141401070000,"Repeatability of the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Comments,PX141401040300,"Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Done,PX141401040100,"Was blood drawn?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Sample,PX141401040200,"Was full sample obtained?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Chemotherapy,PX141401020000,"Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Coefficient_Of_Variation,PX141401080000,"Coefficient of variation for the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Make,PX141401060000,"Make of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Manufacturer,PX141401060100,"Manufacturer of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Exclusion_Criteria,PX141401030000,"Exclusion Criteria",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Hemophilia,PX141401010000,"Do you have hemophilia?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Sample_Comments,PX141401050000,"Record any comments about the sample during processing.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Serum_Creatinine_Concentration,PX141401090000,"Serum Creatinine Concentration",0,https://www.phenxtoolkit.org/protocols/view/141401
'
}
$cookies = []
$values = [
(int) 0 => 'default-src https: data: 'unsafe-inline' 'unsafe-eval' 'self' blob:;'
]
$name = 'Content-Security-Policy'
$first = true
$value = 'default-src https: data: 'unsafe-inline' 'unsafe-eval' 'self' blob:;'ErrorEmail\Error\ErrorHandler::_callParentHandleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 113
ErrorEmail\Error\ErrorHandler::handleError() - ROOT/vendor/ebrigham1/cakephp-error-email/src/Error/ErrorHandler.php, line 63
header - [internal], line ??
Cake\Http\ResponseEmitter::emitHeaders() - CORE/src/Http/ResponseEmitter.php, line 177
Cake\Http\ResponseEmitter::emit() - CORE/src/Http/ResponseEmitter.php, line 55
Cake\Http\Server::emit() - CORE/src/Http/Server.php, line 106
[main] - ROOT/webroot/index.php, line 40
Warning (2): Cannot modify header information - headers already sent by (output started at /var/www/PhenxToolkit/cakephp/vendor/cakephp/cakephp/src/Error/Debugger.php:850) [CORE/src/Http/ResponseEmitter.php, line 177]Code Context {
return parent::handleError($code, $description, $file, $line, $context);
}
$response = object(Cake\Http\Response) {
'status' => (int) 200,
'contentType' => 'text/csv',
'headers' => [
'Content-Type' => [
[maximum depth reached]
],
'Content-Security-Policy' => [
[maximum depth reached]
],
'Content-Disposition' => [
[maximum depth reached]
]
],
'file' => null,
'fileRange' => [],
'cookies' => object(Cake\Http\Cookie\CookieCollection) {},
'cacheDirectives' => [],
'body' => '"Variable Name","Variable ID","Variable Description",Version,"dbGaP Mapping"
PX141401_Assay_Repeatability,PX141401070000,"Repeatability of the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Comments,PX141401040300,"Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Done,PX141401040100,"Was blood drawn?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Sample,PX141401040200,"Was full sample obtained?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Chemotherapy,PX141401020000,"Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Coefficient_Of_Variation,PX141401080000,"Coefficient of variation for the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Make,PX141401060000,"Make of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Manufacturer,PX141401060100,"Manufacturer of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Exclusion_Criteria,PX141401030000,"Exclusion Criteria",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Hemophilia,PX141401010000,"Do you have hemophilia?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Sample_Comments,PX141401050000,"Record any comments about the sample during processing.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Serum_Creatinine_Concentration,PX141401090000,"Serum Creatinine Concentration",0,https://www.phenxtoolkit.org/protocols/view/141401
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"Variable Name","Variable ID","Variable Description",Version,"dbGaP Mapping"
PX141401_Assay_Repeatability,PX141401070000,"Repeatability of the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Comments,PX141401040300,"Record any comments about the blood draw, including any reasons for the tube not being drawn according to the protocol.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Done,PX141401040100,"Was blood drawn?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Blood_Draw_Sample,PX141401040200,"Was full sample obtained?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Chemotherapy,PX141401020000,"Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Coefficient_Of_Variation,PX141401080000,"Coefficient of variation for the assay",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Make,PX141401060000,"Make of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Equipment_Manufacturer,PX141401060100,"Manufacturer of the equipment used to determine the concentration of serum creatinine.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Exclusion_Criteria,PX141401030000,"Exclusion Criteria",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Hemophilia,PX141401010000,"Do you have hemophilia?",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Sample_Comments,PX141401050000,"Record any comments about the sample during processing.",0,https://www.phenxtoolkit.org/protocols/view/141401
PX141401_Serum_Creatinine_Concentration,PX141401090000,"Serum Creatinine Concentration",0,https://www.phenxtoolkit.org/protocols/view/141401